SNP Profiles of UF 613   View Data

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 Key

 1234567891011121314
_Input profile
CGATCCTTCTACCCAGCCATAGAAACCT
1._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
2._RUQ_1573
__CCTTCTACCCAGCCAT_AAACCT
3._RUQ_1573
__CC____AG____AC_
4._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
5._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
6._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
7._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
8._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
9._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
10._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
11._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
12._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
13._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
14._GC-05-057-2-08
CGATCCTTCTACCCAGCCATAGAAACCT
15._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
16._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
17._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
18._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
19._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
20._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
21._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
22._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
23._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
24._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
25._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
26._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
27._UF_613
CGATCCTTCTACCCAGCCATAGAAACCT
28._GC-08-046-1-57
CGATCCTTCTACCCAGCCATAGAAACCT
29._UF_613
CGATCCTTCTAC_AGCCATAGAAACCT
30._RUQ_1573
__CC_CTACGGAG_AT____
31._UF_613
CGATAAGTTTCCCCAG_AAGGAGACCT
 1516171819202122232425262728
_Input profile
GTCCACCTAATTGGCTTTGGATTTAGCT
1._UF_613
GTCCACCTAATTGGCTTTGGATTTAGCT
2._RUQ_1573
GTCCACCT_TTGGCT____AGCT
3._RUQ_1573
_CCAC_AATTGG_____AG_
4._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
5._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
6._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
7._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
8._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
9._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
10._GC-05-057-2-08
GTCCACCT_TTGGCTTTGGATTTAGCT
11._GC-05-057-2-08
GTCCACCT_TTGGCTTTGGATTTAGCT
12._GC-05-057-2-08
GTCCACCT_TTGGCTTTGGATTTAGCT
13._GC-05-057-2-08
GTCCACCT_TTGGCTTTGGATTTAGCT
14._GC-05-057-2-08
GTCCACCT_TTGGCTTTGGATTTAGCT
15._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
16._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
17._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
18._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
19._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
20._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
21._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
22._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
23._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
24._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
25._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
26._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
27._UF_613
GTCCACCT_TTGGCTTTGGATTTAGCT
28._GC-08-046-1-57
GTCCACCT_TTGGCTTTGGATTTAGCT
29._UF_613
GTCCACCTAATTGGCTTTGGATTTAGCT
30._RUQ_1573
_CCAC___CCCT___TT_CT
31._UF_613
GTCGACTTAGGGCGCTCTCGATCTAGTT
 293031323334353637383940  
_Input profile
AGATCTCTGTCCACCTCTGGAGCTX_XX_X
1._UF_613
AGATCTCTGTCCACCTCTGGAGCTX_XX_X
2._RUQ_1573
____GT___CTGGAG_X_XX_X
3._RUQ_1573
AG_CT_GT____GG__X_XX_X
4._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
5._GC-08-046-1-57
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
6._GC-08-046-1-57
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
7._GC-08-046-1-57
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
8._GC-08-046-1-57
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
9._GC-08-046-1-57
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
10._GC-05-057-2-08
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
11._GC-05-057-2-08
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
12._GC-05-057-2-08
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
13._GC-05-057-2-08
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
14._GC-05-057-2-08
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
15._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
16._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
17._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
18._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
19._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
20._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
21._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
22._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
23._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
24._UF_613
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
25._GC-08-046-1-57
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
26._GC-08-046-1-57
AGATCTCTGTCCAACTCTGGAGCTX_XX_X
27._UF_613
AGATCTCTGTCCAA_CTGGAGCTX_XX_X
28._GC-08-046-1-57
AGATCTCTGTCCAA_CTGGAGCTX_XX_X
29._UF_613
AGAT_CTGTCCACCTCTGGAGTTX_XX_X
30._RUQ_1573
_________CC__X_XX_X
31._UF_613
AGAACTTTGTCCACCTCCCGAGCTX_XX_X

Input profile: UF_613 RUQ_1573

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._UF_613

identical
40 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._UF_613 RUQ_1573

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._UF_613 RUQ_1573

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 10
 Dapeng Zhang, 2016

5._UF_613 GC-08-046-1-57

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._UF_613 GC-08-046-1-57

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._UF_613 GC-08-046-1-57

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

8._UF_613 GC-08-046-1-57

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

9._UF_613 GC-08-046-1-57

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._UF_613 GC-05-057-2-08

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

11._UF_613 GC-05-057-2-08

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

12._UF_613 GC-05-057-2-08

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._UF_613 GC-05-057-2-08

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._UF_613 GC-05-057-2-08

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 4 > FP
 Dapeng Zhang, 2016

16._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 3 > FP
 Dapeng Zhang, 2016

17._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 1 > FP
 Dapeng Zhang, 2016

18._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

19._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 6
 Dapeng Zhang, 2016

20._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 5 > FP
 Dapeng Zhang, 2016

21._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 4 > FP
 Dapeng Zhang, 2016

22._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 1 > FP
 Dapeng Zhang, 2016

23._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 3
 Dapeng Zhang, 2016

24._UF_613

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

25._UF_613 GC-08-046-1-57

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._UF_613 GC-08-046-1-57

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

27._UF_613

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

28._UF_613 GC-08-046-1-57

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

29._UF_613

98.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A93 T2
 Dapeng Zhang, 2016

30._UF_613 RUQ_1573

76.9 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

31._UF_613

71.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520